PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT16679
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 302aa    MW: 33377.1 Da    PI: 6.5122
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT16679genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.44.9e-52121541128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..............kvka...eekewyfFskrdkkyatgkrknratksgyWk 84 
               +ppGfrFhPt+eelv +yL++kv+++k++l ++i+evd+y++ePwdL++              +  a   +++ewyfFs +d+ky++g+r+nrat++g+Wk
  EMT16679  12 VPPGFRFHPTEEELVGYYLARKVAAQKIDL-DIIQEVDLYRIEPWDLQErcgggrggrgarqvA--AedeQSSEWYFFSFKDRKYPSGTRTNRATAAGFWK 109
               69****************************.99**************95689999999988542..3222445**************************** PP

       NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
               atg+dk+v+s+ ++ ++g++ktLvfy+grap+g+ktdW++heyrl
  EMT16679 110 ATGRDKPVTSSsSRGVIGMRKTLVFYRGRAPNGRKTDWIIHEYRL 154
               *********9866778***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-558175IPR003441NAC domain
PROSITE profilePS5100556.6512175IPR003441NAC domain
PfamPF023657.1E-2713154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009741Biological Processresponse to brassinosteroid
GO:0045491Biological Processxylan metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:0050832Biological Processdefense response to fungus
GO:0071365Biological Processcellular response to auxin stimulus
GO:0090059Biological Processprotoxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDQHNHQEES CVPPGFRFHP TEEELVGYYL ARKVAAQKID LDIIQEVDLY RIEPWDLQER  60
CGGGRGGRGA RQVAAEDEQS SEWYFFSFKD RKYPSGTRTN RATAAGFWKA TGRDKPVTSS  120
SSRGVIGMRK TLVFYRGRAP NGRKTDWIIH EYRLQTSEHA PTQEEGWVVC RAFQKPTPNQ  180
RPSYIFPAYA AAPGLGGYYE ARPWLHGQGG DLHYLQSATC AAGAGGLGFP GQGIQYSDDL  240
LESKQSLFGN IPQLIESPPT TTAVAGGGDA GYDVVQQGQA AAGIDWNFLD SLLSTSQLHL  300
QQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-4931756168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00017PBMTransfer from AT1G71930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3677890.0AK367789.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448830.11e-115hypothetical protein SORBIDRAFT_06g034010
SwissprotQ9C8W92e-91NAC30_ARATH; NAC domain-containing protein 30
TrEMBLN1R3N90.0N1R3N9_AEGTA; NAC domain-containing protein 7
STRINGMLOC_67250.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25943791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.13e-84vascular related NAC-domain protein 7